Light microscopy analysis encompasses the analysis of data generated by any light microscopy modality (ie, brightfield, phase contrast, widefield epi-fluorescence, confocal, lightsheet, etc) and across any sample type.
The services we provide include, but are not necessarily limited to, the following use-cases:
- Image restoration and denoising: Removal of pixel-independent noise from images to increase signal-to-noise ratio (SNR).
- Semantic and Instance segmentation: Identification and segmentation of objects in an image, generation of image masks.
- Quantitative Image Analysis: Quantification of intensity levels in images or segmented objects.
- Morphometric Analysis: Analysis of shape and morphology of segmented objects.
- Custom pipeline development: Construction of an analysis pipeline combining two or more individual steps.
While these are examples of the services we can provide, we anticipate that most projects will require some combination of tools and services and so we will work with users to craft pipelines that fulfil their analysis needs, as well as provide training and support in their future use. Our ethos is to work openly and transparently with our users in the spirit of scientific collaboration. During the application phase, it will only be necessary to describe the data and the desired form of the analysis result; the precise details of the analysis will be discussed with the users upon selection of the project.