Computational biology

Pinheiro Group

Can we predict ecological and evolutionary processes?

Urgent challenges of modern medicine require understanding evolutionary processes of pathogens. But predicting evolution is a theoretical challenge. Evolutionary dynamics depend on cell metabolism and ecological resources. This complex interplay gives rise to strong nonlinearities generated by interactions that are often not captured by modeling individual parts – they require systems-wide modeling. Predicting evolutionary dynamics introduces further challenges: We must do systems biology across genetically different organisms and integrate stochastic processes operating at different scales. How can we distill this seemingly overwhelming complexity of biological evolution into simple, quantitative frameworks that can ultimately generate evolutionary predictions?

At the Pinheiro Group, we integrate theoretical and experimental research to develop a predictive framework for evolutionary processes under ecological complexity grounded on models of cell metabolism. We are a hybrid theoretical and experimental lab with a strong interest in understanding antibiotic resistance evolution in microbial communities. We combine systems biology approaches, evolutionary modeling, computational methods, data analysis, and data from evolution experiments, establishing a strong dialog between theory and experiments: We use theory to identify interesting regimes that can optimize experimental designs and biology to motivate new theoretical methods.

Get in touch for open positions!

Email: fernanda.pinheiro[at]

Group members