Joran Deschamps

I am a researcher dedicated to developing open-source tools for bio-image analysis. I lead a small team of software engineers on various technology development projects, often in collaboration with research groups.

I studied condensed matter and biophysics in Paris, before joining EMBL (Heidelberg, Germany) to do my PhD, and then as a Scientific Officer. During this time, I developed open-source hardware, superresolution methods and new optical designs, always with a strong focus on making my research as reproducible and as transferable to other laboratories as possible. I have also dedicated a large portion of my time to open-source software and contributed to significant community projects, such as Fiji and Micro-Manager.

After a short post-doc at the CSBD/MPI-CBG (Dresden, Germany) focusing on deep learning integration into Fiji, I moved to the Human Technopole to help create the Image Analysis Facility. Here, I coordinate a team of research software engineers with the goal of continuously developing and maintaining state of the art tools for image analysis, with a deep learning flavor.

Check out some of the projects the tech dev team worked on:

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Contatti

[email protected]

Pubblicazioni

  • 02/2023 - HardwareX

    MicroFPGA: An affordable FPGA platform for microscope control

    Modern microscopy relies increasingly on microscope automation to improve throughput, ensure reproducibility or observe rare events. Automation requires computer control of the important elements of the microscope. Furthermore, optical elements that are usually fixed or manually movable can be placed on electronically-controllable elements. In most cases, a central electronics board is necessary to generate the control signals they require and to […]

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